IL_7D63_010

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GGU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_010 not in the Motif Atlas

Geometric match to IL_5MSF_001

Geometric discrepancy: 0.1076

The information below is about IL_5MSF_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7D63|1|5A|G|505
7D63|1|5A|G|506
7D63|1|5A|U|507
*
7D63|1|5A|A|529
7D63|1|5A|A|530
7D63|1|5A|C|531

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3D

Nucleolar protein 56

Chain B6

U3 small nucleolar RNA-associated protein 6

Chain RQ

U3 small nucleolar RNA-associated protein 14