3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UUAUUU*AUUCA
Length
11 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_019 not in the Motif Atlas
Homologous match to IL_4V88_393
Geometric discrepancy: 0.2105
The information below is about IL_4V88_393
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37842.2
Basepair signature
cWW-cWW-L-R-cWW-cWW-R-L
Number of instances in this motif group
4

Unit IDs

7D63|1|SA|U|117
7D63|1|SA|U|118
7D63|1|SA|A|119
7D63|1|SA|U|120
7D63|1|SA|U|121
7D63|1|SA|U|122
*
7D63|1|SA|A|295
7D63|1|SA|U|296
7D63|1|SA|U|297
7D63|1|SA|C|298
7D63|1|SA|A|299

Current chains

Chain SA
18S rRNA

Nearby chains

Chain SF
40S ribosomal protein S4-A
Chain SJ
40S ribosomal protein S8-A

Coloring options:


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