3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UUUCGA*UG
Length
8 nucleotides
Bulged bases
7D63|1|SA|U|320, 7D63|1|SA|C|321
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_028 not in the Motif Atlas
Geometric match to IL_5Y58_001
Geometric discrepancy: 0.2717
The information below is about IL_5Y58_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_45649.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

7D63|1|SA|U|318
7D63|1|SA|U|319
7D63|1|SA|U|320
7D63|1|SA|C|321
7D63|1|SA|G|322
7D63|1|SA|A|323
*
7D63|1|SA|U|345
7D63|1|SA|G|346

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RA
Ribosome biogenesis protein ENP2
Chain RY
Protein BFR2
Chain SJ
40S ribosomal protein S8-A
Chain SM
40S ribosomal protein S11-A

Coloring options:


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