IL_7D63_031

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

7D63|1|SA|G|459

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_031 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2309

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7D63|1|SA|U|447
7D63|1|SA|C|448
*
7D63|1|SA|G|458
7D63|1|SA|G|459
7D63|1|SA|A|460

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A