IL_7D63_033

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_033 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1971

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7D63|1|SA|G|514
7D63|1|SA|A|515
7D63|1|SA|G|516
*
7D63|1|SA|C|536
7D63|1|SA|G|537
7D63|1|SA|A|538
7D63|1|SA|G|539
7D63|1|SA|G|540
7D63|1|SA|A|541
7D63|1|SA|A|542
7D63|1|SA|C|543

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A