3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
GGCAAGUC*GCAGCCGCGGUAAUUCC
Length
25 nucleotides
Bulged bases
7D63|1|SA|A|556
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7D63|1|SA|G|552
7D63|1|SA|G|553
7D63|1|SA|C|554
7D63|1|SA|A|555
7D63|1|SA|A|556
7D63|1|SA|G|557
7D63|1|SA|U|558
7D63|1|SA|C|559
*
7D63|1|SA|G|568
7D63|1|SA|C|569
7D63|1|SA|A|570
7D63|1|SA|G|571
7D63|1|SA|C|572
7D63|1|SA|C|573
7D63|1|SA|G|574
7D63|1|SA|C|575
7D63|1|SA|G|576
7D63|1|SA|G|577
7D63|1|SA|U|578
7D63|1|SA|A|579
7D63|1|SA|A|580
7D63|1|SA|U|581
7D63|1|SA|U|582
7D63|1|SA|C|583
7D63|1|SA|C|584

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5D
U3 small nucleolar RNA-associated protein 11
Chain 5E
U3 small nucleolar RNA-associated protein MPP10
Chain 5G
U3 small nucleolar ribonucleoprotein protein IMP4
Chain 5H
Something about silencing protein 10
Chain RJ
Ribosome biogenesis protein BMS1
Chain RN
Nucleolar complex protein 14
Chain SY
40S ribosomal protein S23-A

Coloring options:

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