IL_7D63_039

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_039 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1835

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7D63|1|SA|G|631
7D63|1|SA|U|632
*
7D63|1|SA|A|967
7D63|1|SA|U|968
7D63|1|SA|C|969

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SO

40S ribosomal protein S13

Chain SX

40S ribosomal protein S22-B