IL_7D63_042
3D structure
- PDB id
- 7D63 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.3 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D63_042 not in the Motif Atlas
- Geometric match to IL_4V88_428
- Geometric discrepancy: 0.1023
- The information below is about IL_4V88_428
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
7D63|1|SA|A|865
7D63|1|SA|G|866
*
7D63|1|SA|C|962
7D63|1|SA|A|963
7D63|1|SA|U|964
7D63|1|SA|U|965
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain SO
- 40S ribosomal protein S13
- Chain SX
- 40S ribosomal protein S22-B
- Chain Sc
- 40S ribosomal protein S27-A
Coloring options: