IL_7D63_043

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7D63|1|SA|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_043 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1005

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7D63|1|SA|G|867
7D63|1|SA|G|868
7D63|1|SA|A|869
7D63|1|SA|C|870
*
7D63|1|SA|G|957
7D63|1|SA|U|958
7D63|1|SA|U|959
7D63|1|SA|U|960
7D63|1|SA|U|961

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RF

Ribosomal RNA-processing protein 7

Chain SO

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27-A