3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_048 not in the Motif Atlas
Geometric match to IL_5CNR_002
Geometric discrepancy: 0.1969
The information below is about IL_5CNR_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_14190.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
134

Unit IDs

7D63|1|SA|C|1033
7D63|1|SA|C|1034
*
7D63|1|SA|G|1083
7D63|1|SA|A|1084
7D63|1|SA|G|1085

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5I
Protein SOF1
Chain 5K
rRNA-processing protein FCF1
Chain SX
40S ribosomal protein S22-B

Coloring options:


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