3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
CUUA*UUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_061 not in the Motif Atlas
Geometric match to IL_5TBW_041
Geometric discrepancy: 0.3095
The information below is about IL_5TBW_041
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

7D63|1|SA|C|1664
7D63|1|SA|U|1665
7D63|1|SA|U|1666
7D63|1|SA|A|1667
*
7D63|1|SA|U|1734
7D63|1|SA|U|1735
7D63|1|SA|G|1736
7D63|1|SA|G|1737

Current chains

Chain SA
18S rRNA

Nearby chains

Chain B2
U3 small nucleolar RNA-associated protein 12

Coloring options:


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