3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UCGUU*AAA
Length
8 nucleotides
Bulged bases
7D63|1|SA|C|114
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_068 not in the Motif Atlas
Geometric match to IL_2O3X_003
Geometric discrepancy: 0.1965
The information below is about IL_2O3X_003
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_61702.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
6

Unit IDs

7D63|1|SA|U|113
7D63|1|SA|C|114
7D63|1|SA|G|115
7D63|1|SA|U|116
7D63|1|SA|U|117
*
7D63|1|SA|A|299
7D63|1|SA|A|300
7D63|1|SA|A|301

Current chains

Chain SA
18S rRNA

Nearby chains

Chain SF
40S ribosomal protein S4-A
Chain SJ
40S ribosomal protein S8-A
Chain SM
40S ribosomal protein S11-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5393 s