IL_7D63_068

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

UCGUU*AAA

Length

8 nucleotides

Bulged bases

7D63|1|SA|C|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_068 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1965

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7D63|1|SA|U|113
7D63|1|SA|C|114
7D63|1|SA|G|115
7D63|1|SA|U|116
7D63|1|SA|U|117
*
7D63|1|SA|A|299
7D63|1|SA|A|300
7D63|1|SA|A|301

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A