IL_7D6Z_016

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7D6Z|1|A|G|801, 7D6Z|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0967

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7D6Z|1|A|G|674
7D6Z|1|A|A|675
7D6Z|1|A|A|676
7D6Z|1|A|A|677
7D6Z|1|A|C|678
*
7D6Z|1|A|G|799
7D6Z|1|A|A|800
7D6Z|1|A|G|801
7D6Z|1|A|A|802
7D6Z|1|A|U|803
7D6Z|1|A|A|804
7D6Z|1|A|G|805
7D6Z|1|A|C|806

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15