IL_7D6Z_093

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7D6Z|1|A|G|2576, 7D6Z|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_093 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1248

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7D6Z|1|A|C|2510
7D6Z|1|A|U|2511
7D6Z|1|A|C|2512
*
7D6Z|1|A|G|2574
7D6Z|1|A|C|2575
7D6Z|1|A|G|2576
7D6Z|1|A|A|2577
7D6Z|1|A|G|2578

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain a

50S ribosomal protein L32