IL_7D6Z_133
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D6Z_133 not in the Motif Atlas
- Geometric match to IL_5J7L_023
- Geometric discrepancy: 0.1296
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7D6Z|1|f|G|450
7D6Z|1|f|A|451
7D6Z|1|f|A|452
7D6Z|1|f|G|453
7D6Z|1|f|G|454
7D6Z|1|f|G|455
*
7D6Z|1|f|C|477
7D6Z|1|f|A|478
7D6Z|1|f|U|479
7D6Z|1|f|U|480
7D6Z|1|f|G|481
7D6Z|1|f|A|482
7D6Z|1|f|C|483
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain w
- 30S ribosomal protein S16
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