IL_7D6Z_136

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7D6Z|1|f|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_136 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1393

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7D6Z|1|f|C|569
7D6Z|1|f|G|570
7D6Z|1|f|U|571
7D6Z|1|f|A|572
7D6Z|1|f|A|573
7D6Z|1|f|A|574
7D6Z|1|f|G|575
*
7D6Z|1|f|C|880
7D6Z|1|f|G|881

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain s

30S ribosomal protein S12

Chain x

30S ribosomal protein S17