IL_7D6Z_166

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7D6Z|1|f|C|1400, 7D6Z|1|f|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_166 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0976

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7D6Z|1|f|C|1399
7D6Z|1|f|C|1400
7D6Z|1|f|G|1401
*
7D6Z|1|f|C|1501
7D6Z|1|f|A|1502
7D6Z|1|f|A|1503
7D6Z|1|f|G|1504

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain l

30S ribosomal protein S5