IL_7D6Z_169

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_169 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2564

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7D6Z|1|f|C|1407
7D6Z|1|f|A|1408
7D6Z|1|f|C|1409
*
7D6Z|1|f|G|1491
7D6Z|1|f|A|1492
7D6Z|1|f|A|1493
7D6Z|1|f|G|1494

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain s

30S ribosomal protein S12