IL_7D7Y_001

3D structure

PDB id

7D7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine triphosphate (ATP)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AACAACCCCG*CU

Length

12 nucleotides

Bulged bases

7D7Y|1|A|A|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D7Y_001 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2211

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7D7Y|1|A|A|7
7D7Y|1|A|A|8
7D7Y|1|A|C|9
7D7Y|1|A|A|10
7D7Y|1|A|A|11
7D7Y|1|A|C|12
7D7Y|1|A|C|13
7D7Y|1|A|C|14
7D7Y|1|A|C|15
7D7Y|1|A|G|16
*
7D7Y|1|A|C|45
7D7Y|1|A|U|46

Current chains

Chain A

18GAAA (52-MER)

Nearby chains