IL_7D80_014

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_014 not in the Motif Atlas

Geometric match to IL_5J7L_259

Geometric discrepancy: 0.1835

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7D80|1|A|C|672
7D80|1|A|C|673
7D80|1|A|G|674
*
7D80|1|A|C|806
7D80|1|A|U|807
7D80|1|A|G|808

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain k

50S ribosomal protein L15