IL_7D80_026

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_026 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.4346

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7D80|1|A|G|875
7D80|1|A|C|876
7D80|1|A|A|877
7D80|1|A|A|878
7D80|1|A|G|879
*
7D80|1|A|C|898
7D80|1|A|A|899
7D80|1|A|A|900
7D80|1|A|C|901
7D80|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA