3D structure

PDB id
7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
CGAGGC*GCGUAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D80_043 not in the Motif Atlas
Geometric match to IL_3LQX_002
Geometric discrepancy: 0.2754
The information below is about IL_3LQX_002
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_76308.6
Basepair signature
cWW-tSH-tHW-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7D80|1|A|C|1357
7D80|1|A|G|1358
7D80|1|A|A|1359
7D80|1|A|G|1360
7D80|1|A|G|1361
7D80|1|A|C|1362
*
7D80|1|A|G|1369
7D80|1|A|C|1370
7D80|1|A|G|1371
7D80|1|A|U|1372
7D80|1|A|A|1373
7D80|1|A|G|1374

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L34
Chain b
50S ribosomal protein L2
Chain v
50S ribosomal protein L28

Coloring options:


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