IL_7D80_043
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAGGC*GCGUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D80_043 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2754
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7D80|1|A|C|1357
7D80|1|A|G|1358
7D80|1|A|A|1359
7D80|1|A|G|1360
7D80|1|A|G|1361
7D80|1|A|C|1362
*
7D80|1|A|G|1369
7D80|1|A|C|1370
7D80|1|A|G|1371
7D80|1|A|U|1372
7D80|1|A|A|1373
7D80|1|A|G|1374
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain b
- 50S ribosomal protein L2
- Chain v
- 50S ribosomal protein L28
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