IL_7D80_045

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

7D80|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_045 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1489

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7D80|1|A|C|1417
7D80|1|A|G|1418
7D80|1|A|A|1419
7D80|1|A|A|1420
7D80|1|A|G|1421
*
7D80|1|A|C|1577
7D80|1|A|U|1578
7D80|1|A|A|1579
7D80|1|A|A|1580
7D80|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains