IL_7D80_048

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGC*GUCCC

Length

9 nucleotides

Bulged bases

7D80|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_048 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2952

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7D80|1|A|G|1448
7D80|1|A|G|1449
7D80|1|A|G|1450
7D80|1|A|C|1451
*
7D80|1|A|G|1459
7D80|1|A|U|1460
7D80|1|A|C|1461
7D80|1|A|C|1462
7D80|1|A|C|1463

Current chains

Chain A

23S ribosomal RNA

Nearby chains