IL_7D80_049

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

7D80|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_049 not in the Motif Atlas

Geometric match to IL_3BNN_006

Geometric discrepancy: 0.3463

The information below is about IL_3BNN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7D80|1|A|U|1468
7D80|1|A|A|1469
7D80|1|A|A|1470
7D80|1|A|G|1471
7D80|1|A|C|1472
*
7D80|1|A|G|1519
7D80|1|A|U|1520
7D80|1|A|G|1521
7D80|1|A|A|1522
7D80|1|A|U|1523
7D80|1|A|G|1524

Current chains

Chain A

23S ribosomal RNA

Nearby chains