IL_7D80_065

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_065 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.1795

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7D80|1|A|U|1864
7D80|1|A|U|1865
7D80|1|A|A|1866
7D80|1|A|G|1867
*
7D80|1|A|C|1874
7D80|1|A|G|1875
7D80|1|A|A|1876
7D80|1|A|A|1877
7D80|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains