IL_7D80_066

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCGAAAUUCCUUG*CCUGCAC

Length

20 nucleotides

Bulged bases

7D80|1|A|A|1938, 7D80|1|A|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|1933
7D80|1|A|C|1934
7D80|1|A|G|1935
7D80|1|A|A|1936
7D80|1|A|A|1937
7D80|1|A|A|1938
7D80|1|A|U|1939
7D80|1|A|U|1940
7D80|1|A|C|1941
7D80|1|A|C|1942
7D80|1|A|U|1943
7D80|1|A|U|1944
7D80|1|A|G|1945
*
7D80|1|A|C|1961
7D80|1|A|C|1962
7D80|1|A|U|1963
7D80|1|A|G|1964
7D80|1|A|C|1965
7D80|1|A|A|1966
7D80|1|A|C|1967

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA

Chain y

Transfer RNA; tRNA