IL_7D80_070

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAC*GUACUC

Length

10 nucleotides

Bulged bases

7D80|1|A|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_070 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.2807

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7D80|1|A|G|2069
7D80|1|A|A|2070
7D80|1|A|A|2071
7D80|1|A|C|2072
*
7D80|1|A|G|2437
7D80|1|A|U|2438
7D80|1|A|A|2439
7D80|1|A|C|2440
7D80|1|A|U|2441
7D80|1|A|C|2442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain d

50S ribosomal protein L4

Chain y

Transfer RNA; tRNA