IL_7D80_090

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUG*CACUG

Length

8 nucleotides

Bulged bases

7D80|1|A|C|2712, 7D80|1|A|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_090 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.2414

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7D80|1|A|U|2695
7D80|1|A|U|2696
7D80|1|A|G|2697
*
7D80|1|A|C|2710
7D80|1|A|A|2711
7D80|1|A|C|2712
7D80|1|A|U|2713
7D80|1|A|G|2714

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19