IL_7D80_100
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGAAA*UGCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D80_100 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.3854
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
7D80|1|B|G|127
7D80|1|B|G|128
7D80|1|B|A|129
7D80|1|B|A|130
7D80|1|B|A|131
*
7D80|1|B|U|231
7D80|1|B|G|232
7D80|1|B|C|233
7D80|1|B|C|234
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain Q
- 30S ribosomal protein S16
- Chain R
- 30S ribosomal protein S17
- Chain U
- 30S ribosomal protein S20
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