IL_7D80_107

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_107 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2578

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7D80|1|B|U|409
7D80|1|B|G|410
7D80|1|B|A|411
7D80|1|B|A|412
7D80|1|B|G|413
7D80|1|B|A|414
7D80|1|B|A|415
7D80|1|B|G|416
*
7D80|1|B|U|427
7D80|1|B|G|428
7D80|1|B|U|429
7D80|1|B|A|430
7D80|1|B|A|431
7D80|1|B|A|432
7D80|1|B|G|433

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4