3D structure

PDB id
7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
UGAAAUCCC*GGAACUG
Length
16 nucleotides
Bulged bases
7D80|1|B|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7D80|1|B|U|605
7D80|1|B|G|606
7D80|1|B|A|607
7D80|1|B|A|608
7D80|1|B|A|609
7D80|1|B|U|610
7D80|1|B|C|611
7D80|1|B|C|612
7D80|1|B|C|613
*
7D80|1|B|G|627
7D80|1|B|G|628
7D80|1|B|A|629
7D80|1|B|A|630
7D80|1|B|C|631
7D80|1|B|U|632
7D80|1|B|G|633

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain E
30S ribosomal protein S4
Chain I
30S ribosomal protein S8
Chain Q
30S ribosomal protein S16

Coloring options:

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