3D structure

PDB id
7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
7D80|1|B|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D80_124 not in the Motif Atlas
Homologous match to IL_4LFB_036
Geometric discrepancy: 0.2038
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_28408.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
60

Unit IDs

7D80|1|B|G|925
7D80|1|B|G|926
7D80|1|B|G|927
*
7D80|1|B|U|1390
7D80|1|B|U|1391

Current chains

Chain B
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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