IL_7D80_136

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAGCGG*CCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_136 not in the Motif Atlas

Homologous match to IL_6CZR_159

Geometric discrepancy: 0.3503

The information below is about IL_6CZR_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|C|1129
7D80|1|B|A|1130
7D80|1|B|G|1131
7D80|1|B|C|1132
7D80|1|B|G|1133
7D80|1|B|G|1134
*
7D80|1|B|C|1140
7D80|1|B|C|1141
7D80|1|B|G|1142
7D80|1|B|G|1143

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S9