IL_7D80_148

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_148 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3498

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7D80|1|B|G|1439
7D80|1|B|U|1440
7D80|1|B|A|1441
7D80|1|B|G|1442
*
7D80|1|B|C|1460
7D80|1|B|G|1461
7D80|1|B|C|1462

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20

Chain o

50S ribosomal protein L19