IL_7D80_171

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAAGCCUGCGAAGG*CUGGAGGUAUC

Length

26 nucleotides

Bulged bases

7D80|1|A|A|1205, 7D80|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|1202
7D80|1|A|U|1203
7D80|1|A|A|1204
7D80|1|A|A|1205
7D80|1|A|G|1206
7D80|1|A|C|1207
7D80|1|A|C|1208
7D80|1|A|U|1209
7D80|1|A|G|1210
7D80|1|A|C|1211
7D80|1|A|G|1212
7D80|1|A|A|1213
7D80|1|A|A|1214
7D80|1|A|G|1215
7D80|1|A|G|1216
*
7D80|1|A|C|1233
7D80|1|A|U|1234
7D80|1|A|G|1235
7D80|1|A|G|1236
7D80|1|A|A|1237
7D80|1|A|G|1238
7D80|1|A|G|1239
7D80|1|A|U|1240
7D80|1|A|A|1241
7D80|1|A|U|1242
7D80|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20