IL_7D80_174

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGGC*GUCCCG

Length

11 nucleotides

Bulged bases

7D80|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_174 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3174

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7D80|1|A|C|1447
7D80|1|A|G|1448
7D80|1|A|G|1449
7D80|1|A|G|1450
7D80|1|A|C|1451
*
7D80|1|A|G|1459
7D80|1|A|U|1460
7D80|1|A|C|1461
7D80|1|A|C|1462
7D80|1|A|C|1463
7D80|1|A|G|1464

Current chains

Chain A

23S ribosomal RNA

Nearby chains