IL_7D80_178

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7D80|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_178 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1328

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7D80|1|A|C|1686
7D80|1|A|G|1687
7D80|1|A|U|1688
7D80|1|A|A|1689
7D80|1|A|A|1690
7D80|1|A|C|1691
*
7D80|1|A|G|1696
7D80|1|A|G|1697
7D80|1|A|A|1698
7D80|1|A|G|1699
7D80|1|A|A|1700
7D80|1|A|A|1701
7D80|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2