IL_7D80_186

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGGGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUACCA

Length

37 nucleotides

Bulged bases

7D80|1|A|G|2124, 7D80|1|A|G|2125, 7D80|1|A|C|2129, 7D80|1|A|U|2132, 7D80|1|A|C|2164, 7D80|1|A|A|2171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|U|2122
7D80|1|A|G|2123
7D80|1|A|G|2124
7D80|1|A|G|2125
7D80|1|A|A|2126
7D80|1|A|G|2127
7D80|1|A|G|2128
7D80|1|A|C|2129
7D80|1|A|U|2130
7D80|1|A|U|2131
7D80|1|A|U|2132
7D80|1|A|G|2133
7D80|1|A|A|2134
7D80|1|A|A|2135
7D80|1|A|G|2136
*
7D80|1|A|U|2155
7D80|1|A|G|2156
7D80|1|A|G|2157
7D80|1|A|A|2158
7D80|1|A|G|2159
7D80|1|A|C|2160
7D80|1|A|C|2161
7D80|1|A|G|2162
7D80|1|A|A|2163
7D80|1|A|C|2164
7D80|1|A|C|2165
7D80|1|A|U|2166
7D80|1|A|U|2167
7D80|1|A|G|2168
7D80|1|A|A|2169
7D80|1|A|A|2170
7D80|1|A|A|2171
7D80|1|A|U|2172
7D80|1|A|A|2173
7D80|1|A|C|2174
7D80|1|A|C|2175
7D80|1|A|A|2176

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA