IL_7D80_210

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_210 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4505

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7D80|1|A|C|274
7D80|1|A|C|275
7D80|1|A|U|276
7D80|1|A|G|277
7D80|1|A|A|278
7D80|1|A|A|279
7D80|1|A|U|280
7D80|1|A|C|281
*
7D80|1|A|G|359
7D80|1|A|U|360
7D80|1|A|G|361
7D80|1|A|A|362
7D80|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains