IL_7DCO_008
3D structure
- PDB id
- 7DCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 7DCO|1|F|A|79, 7DCO|1|F|U|80
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DCO_008 not in the Motif Atlas
- Geometric match to IL_7RQB_098
- Geometric discrepancy: 0.1883
- The information below is about IL_7RQB_098
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71530.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7DCO|1|F|C|67
7DCO|1|F|C|68
*
7DCO|1|F|G|78
7DCO|1|F|A|79
7DCO|1|F|U|80
7DCO|1|F|G|81
Current chains
- Chain F
- U6 snRNA
Nearby chains
- Chain A
- PRP8 isoform 1
- Chain G
- pre-mRNA
- Chain H
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain J
- CLF1 isoform 1
- Chain L
- Pre-mRNA-splicing factor CEF1
- Chain M
- Pre-mRNA-splicing factor CWC24
- Chain P
- Pre-mRNA-processing protein 45
- Chain Q
- Pre-mRNA-splicing factor SLT11
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain v
- PRP11 isoform 1
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