IL_7DCO_010

3D structure

PDB id

7DCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

7DCO|1|G|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DCO_010 not in the Motif Atlas

Geometric match to IL_8B0X_048

Geometric discrepancy: 0.3864

The information below is about IL_8B0X_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7DCO|1|G|A|500
7DCO|1|G|A|501
7DCO|1|G|C|502
*
7DCO|1|H|G|34
7DCO|1|H|U|35

Current chains

Chain G

pre-mRNA

Chain H

U2 snRNA

Nearby chains

Chain 1

HSH155 isoform 1

Chain 5

BJ4_G0056610.mRNA.1.CDS.1