IL_7DCO_018

3D structure

PDB id

7DCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCG*CUUGA

Length

8 nucleotides

Bulged bases

7DCO|1|H|U|1144, 7DCO|1|H|U|1145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DCO|1|H|U|1095
7DCO|1|H|C|1096
7DCO|1|H|G|1097
*
7DCO|1|H|C|1143
7DCO|1|H|U|1144
7DCO|1|H|U|1145
7DCO|1|H|G|1146
7DCO|1|H|A|1147

Current chains

Chain H

U2 snRNA

Nearby chains

Chain l

Small nuclear ribonucleoprotein Sm D3

Chain o

HLJ1_G0053790.mRNA.1.CDS.1

Chain p

BJ4_G0027490.mRNA.1.CDS.1