IL_7DUG_053

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

7DUG|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUG_053 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1035

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7DUG|1|A|C|1399
7DUG|1|A|5MC|1400
7DUG|1|A|G|1401
*
7DUG|1|A|C|1501
7DUG|1|A|A|1502
7DUG|1|A|A|1503
7DUG|1|A|G|1504

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain Y

RNA (5'-R(UPUPUPUPUPU)-3')