IL_7DUH_039

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GACAUG*CAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUH_039 not in the Motif Atlas

Geometric match to IL_4LFB_066

Geometric discrepancy: 0.3983

The information below is about IL_4LFB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.1

Basepair signature

cWW-cWS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

7DUH|1|A|G|993
7DUH|1|A|A|994
7DUH|1|A|C|995
7DUH|1|A|A|996
7DUH|1|A|U|997
7DUH|1|A|G|998
*
7DUH|1|A|C|1043
7DUH|1|A|A|1044
7DUH|1|A|C|1045

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z