IL_7DUH_064

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

7DUH|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUH_064 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.2628

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7DUH|1|A|U|921
7DUH|1|A|G|922
7DUH|1|A|A|923
*
7DUH|1|A|U|1393
7DUH|1|A|A|1394
7DUH|1|A|C|1395
7DUH|1|A|A|1396

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')