IL_7DUJ_019

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUJ_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1803

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7DUJ|1|A|G|450
7DUJ|1|A|A|451
7DUJ|1|A|A|452
7DUJ|1|A|A|453
7DUJ|1|A|C|454
7DUJ|1|A|C|455
*
7DUJ|1|A|G|477
7DUJ|1|A|A|478
7DUJ|1|A|C|479
7DUJ|1|A|U|480
7DUJ|1|A|G|481
7DUJ|1|A|A|482
7DUJ|1|A|C|483

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16