IL_7DUJ_042
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GCU*G(2MG)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DUJ_042 not in the Motif Atlas
- Geometric match to IL_4WF9_042
- Geometric discrepancy: 0.1704
- The information below is about IL_4WF9_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
7DUJ|1|A|G|1050
7DUJ|1|A|C|1051
7DUJ|1|A|U|1052
*
7DUJ|1|A|G|1206
7DUJ|1|A|2MG|1207
7DUJ|1|A|C|1208
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain N
- 30S ribosomal protein S14 type Z
- Chain W
- RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
Coloring options: