IL_7DUK_009

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

7DUK|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0701

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7DUK|1|A|G|148
7DUK|1|A|A|149
7DUK|1|A|C|150
7DUK|1|A|A|151
7DUK|1|A|A|152
7DUK|1|A|C|153
*
7DUK|1|A|G|168
7DUK|1|A|C|169
7DUK|1|A|U|170
7DUK|1|A|A|171
7DUK|1|A|A|172
7DUK|1|A|U|173
7DUK|1|A|C|174

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20