IL_7DUK_020

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUK_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0935

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7DUK|1|A|C|504
7DUK|1|A|G|505
7DUK|1|A|G|506
7DUK|1|A|C|507
7DUK|1|A|C|508
7DUK|1|A|A|509
7DUK|1|A|A|510
7DUK|1|A|C|511
*
7DUK|1|A|G|540
7DUK|1|A|G|541

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S5

Chain L

30S ribosomal protein S12